PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00252.1.g00500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 299aa    MW: 31622.4 Da    PI: 6.8963
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00252.1.g00500.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind94.41.2e-29211282103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.......X CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.......k 75 
                                   F+ k+y++++d++++ +i w +++nsfvv d+  f++++Lp +Fkhsnf+SFvRQLn+Y      + +   ++       +
  Zmw_sc00252.1.g00500.1.sm.mk  21 FVAKTYRMVDDPATDGVIAWGADNNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYVRALRLSAR-VVRAlegfrkvD 100
                                   9**********************************************************644333333.323345555445 PP

                                   TTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  76 ekiweFkhksFkkgkkellekikrkkse 103
                                   ++ weF+h sF +g+++ll++i r++s+
  Zmw_sc00252.1.g00500.1.sm.mk 101 PDRWEFAHVSFLRGQTHLLRHIVRRSSS 128
                                   9************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.18E-3017125IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.9E-3517125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-4517125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-122144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-2621125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-125971IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-127284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MTSGVVVADA AAAAPVGVAP FVAKTYRMVD DPATDGVIAW GADNNSFVVA DPFAFSQTLL  60
PAHFKHSNFS SFVRQLNTYV RALRLSARVV RALEGFRKVD PDRWEFAHVS FLRGQTHLLR  120
HIVRRSSSNN GGVGGGKRKD DGGGGGGTGE EDGAAAVAME VARLKREQRA IEDQVAAMWR  180
RVQETERRPK QMLAFLVKVA GDPQVLRRLL DSSFCVDGGG AGHGLAASGS SDGAGAEIVK  240
RPRLLLDGDS AGRHAAPVIY GAGDDDVDGF FAADDVGFGV GDSGFLPQYA FPVDSTSGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-221212720131Heat shock factor protein 1
5d5v_B2e-221212720131Heat shock factor protein 1
5d5v_D2e-221212720131Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152657.11e-108heat shock factor protein 1
SwissprotQ6EUG45e-97HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLB4FXG71e-108B4FXG7_MAIZE; Uncharacterized protein
STRINGGRMZM2G105348_P011e-108(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470